Advanced Biophotonics Imaging Laboratory
(ABI Lab)

ER stress aggravates diaphragm weakness through activating PERK/JNK signaling in obesity hypoventilation syndrome

Xiang X, Zhu Y, Pan X, Xin W, Chen J, Tang W, Guo R, Yuan W, He X, Zhou L, Ren Z, Wen S, Wang H, Lu T, Li S, Chen T, Zhou Y, Dou Z, Cai M, Zhang X, Chen Y, Shi G

Obesity, 2023; 31 (8), 2076-2089

Unraveling the complexity of Optical Coherence Tomography image segmentation using machine and deep learning techniques: A review

Nawaz M, Uvaliyev A, Bibi K, Wei H, Abaxi SMD, Masood A, Shi P, Ho HP, Yuan W^†

Computerized Medical Imaging and Graphics, 2023; 108:102269

Rectifying Noisy Labels with Sequential Prior: Multi-Scale Temporal Feature Affinity Learning for Robust Video Segmentation

Cui B, Zhang M, Xu M, Wang A, Yuan W^†, Ren H^†

arXiv:2307.05898

Analysis of the D-shaped PCF-based SPR sensor using Resonance Electron Relaxation and Fourier domain method

Luo W, Li X, Abbasi SA, Zhu S, Ho HP Yuan W^†

Optics and Lasers in Engineering 166, 107588

Ultrasensitive and Specific Clustered Regularly Interspaced Short Palindromic Repeats Empowered a Plasmonic Fiber Tip System for Amplification-Free Monkeypox Virus Detection and Genotyping

Chen Y, Chen Z, Li T, Qiu M, Zhang J, Wang Y, Yuan W, Ho HP, Al-Hartomy O, Wageh S, Al-Sehemi AG, Shi X, Li J, Xie Z, Li X, Zhang H

ACS Nano 2023; 17, 13, 12903–12914

Generalist Vision Foundation Models for Medical Imaging: A Case Study of Segment Anything Model on Zero-Shot Medical Segmentation

Shi P, Qiu J, Abaxi SMD, Wei H, Lo FPW, Yuan W^†

Diagnostics 2023; 13(11), 1947

Design and Evaluation of a Flexible Sensorized Robotic OCT Neuroendoscope

Yan J, Chen P, Xue J, Xu C, Qiu Y, Fang H, Lu Y, Wong GKC, Liu YH, Yuan W^†, Cheng SS^†

[ISMR 2023]

LiDeOCTNet: A Lightweight OCT-aware Framework for Segmentation of Irregularly Layered Tissue Structures

Abaxi SMD, Nawaz M, Shi P, Wei H, Abbasi SA, Yuan W^†

TechRxiv:22308655

Electrically switchable and tunable infrared light modulator based on functional graphene metasurface

Luo W, Abbasi SA, Zhu S, Li X, Ho HP, Yuan W^†

Nanophotonics 2023; 12(9), 1797-1807

Large AI Models in Health Informatics: Applications, Challenges, and the Future

Qiu J, Li L, Sun J, Peng J, Shi P, Zhang R, Dong Y, Lam K, Lo FPW, Xiao B, Yuan W, Xu D, Lo B

arXiv:2303.11568

Fiber-optic devices for sensing, manipulating, and imaging cells in vitro and in vivo

Zhu S, Zeng S, Wang Y, Ho HP, Yuan W

Microfluidic Biosensors, 2023; 313-342

Real-Time Detection of Circulating Tumor Cells in Bloodstream Using Plasmonic Fiber Sensors

Zhu S, Xie Z, Chen Y, Liu S, Kwan YW, Zeng S^†, Yuan W^†, Ho HP^†

Biosensors, 2022; 12(11), 968

An Optimization Method for Ultrahigh-resolution Vis-OCT Imaging

Wang J, Xu C, Zhu S, Yuan W

[TENCON 2022]

Atomically Thin Nanomaterials-Enhanced Plasmonic Sensors Operating in Near-Infrared

Zhu S, Yuan W, Crunteanu A, Jaffiol R, Ho HP, Zeng S

[TENCON 2022]

Direct Visualization and Quantitative Imaging of Small Airway Anatomy In Vivo Using Deep Learning Assisted Diffractive OCT

Yuan W, Thiboutot J, Park HC, Li A, Loube J, Mitzner W, Yarmus L, Brown RH, Li XD

IEEE Trans Biomed Eng, 2022

Visualization and Validation of The Microstructures in The Airway Wall in vivo Using Diffractive Optical Coherence Tomography

Thiboutot J*, Yuan W*, Park HC, Li D, Loube J, Mitzner W, Yarmus L, Li XD, Brown RH

Academic radiology, 2022

In vivo assessment of inflammatory bowel disease in rats with ultrahigh-resolution colonoscopic OCT

Yuan W, Feng Y, Chen D, Gharibani P, Chen JD, Yu H, Li XD

Biomedical Optics Express, 2022; 13(4):2091-2102

Integrated scanning spectrometer with a tunable micro-ring resonator and an arrayed waveguide grating

Zhang Z, Wang Y, Wang J, YI D, Chan D, Yuan W, Tsang H

Photonics Research, 2022

Label-free imaging of human brain tissue at subcellular resolution for potential rapid intra-operative assessment of glioma surgery

Chen D, Nauen DW, Park HC, Li D, Yuan W, Li A, Guan H, Kut C, Chaichana KL, Bettegowda C, Quiñones-Hinojosa A, Li XD

Theranostics 2021; 11(15):7222-7234

In vivo assessment of vascular-targeted photodynamic therapy effects on tumor microvasculature using ultrahigh-resolution functional optical coherence tomography

Chen D*, Yuan W*, Park HC, Li XD

Biomedical Optics Express, 2020; 11(8):4316-4325.

Theranostic OCT microneedle for fast ultrahigh-resolution deep-brain imaging and efficient laser ablation in vivo

Yuan W, Chen D, Sarabia-Estrada R, Guerrero- Cázares H, Li D, Quiñones-Hinojosa A, Li XD

Science Advances, 2020; 6(15), eaaz9664.

Ultralow-voltage electrothermal MEMS based fiber-optic scanning probe for forward-viewing endoscopic OCT

Park HC, Zhang X, Yuan W, Zhou L, Xie H, Li XD

Optics Letters, 2019; 44(9): 2232-2235

Parallel deep neural networks for endoscopic OCT image segmentation

Li D, Wu J, He Y, Yao X, Chen D, Park HC, Yuan W, Prince J, Li XD

Biomedical Optics Express, 2019; 10(3):1126-1135

Current advances in COPD imaging

Thiboutot J, Yuan W, Park HC, Lerner AD, Mitzner W, Yarmus LB, Li XD, Brown R

Academic Radiology, 2019; 26(3): 335-343

Super-achromatic optical coherence tomography capsule for ultrahigh-resolution imaging of esophagus

Li K, Liang W, Mavadia-Shukla J, Park HC, Li D, Yuan W, Wan S, Li XD,

Journal of Biophotonics, 2018; 12(3): e201800205

Robust layer segmentation of esophageal OCT images based on graph search using edge-enhanced weights

Gan M, Wang C, Yang T, Yang N, Zhang M, Yuan W, Li XD, Wang L

Biomedical Optics Express, 2018; 9(9): 4481-4495

Super-achromatic monolithic microprobe for ultrahigh-resolution endoscopic optical coherence tomography at 800 nm

Yuan W, Brown R, Mitzner W, Yarmus L, Li XD,

Nature Communications, 2017; 8(1): 1531

Robust and fast characterization of OCT-based optical attenuation using a novel frequency-domain algorithm for brain cancer detection

Yuan W, Kut C, Liang W, Li XD,

Scientific Reports, 2017; 7: 44909

Automatic and robust segmentation of endoscopic OCT images and optical staining

Zhang J*, Yuan W*, Liang WS, Yu S, Liang Y, Xu Z, Wei Y, Li XD

Biomedical Optics Express, 2017; 8(5): 2697-2708

Broadband rotary joint for high-speed ultrahigh-resolution endoscopic OCT imaging at 800 nm

Park HC, Mavadia-Shukla J, Yuan W, Alemohammad M, Li XD,

Optics Letters, 2017; 42(23): 4978-4981

Optimal operational conditions for supercontinuum-based ultrahigh-resolution endoscopic OCT imaging

Yuan W, Mavadia-Shukla J, Xi J, Liang W, Yu X, Yu S, Li XD

Optics Letters, 2016; 41:250-253

Optical clearing for luminal organs imaging with ultrahigh-resolution optical coherence tomography

Liang Y*, Yuan W*, Mavadia-Shukla J, Li XD

Journal of Biomedical Optics, 2016; 21: 081211

Ultrahigh resolution endoscopic optical coherence tomography at 800 nm for imaging of bile duct

Yuan W, Mavadia-Shukla J, Ngamruengphong S, Gabrielson KL, Kalloo AN, Li XD

Gastrointestinal Endoscopy, 2016; 83:AB487

Coherent mid-infrared supercontinuum generation with As2Se3 photonic crystal fiber and femtosecond Airy pulses

Yuan W^†

Laser Physics Letters, 2015; 12:125101

Laser-assisted lateral optical fiber processing for selective infiltration

Zhang BM, Lai Y, Yuan W, Seah YP, Shum PP, Yu X, Wei H

Optics Express, 2014; 22:2675-2680

High-Tg TOPAS microstructured polymer optical fiber for fiber Bragg grating strain sensing at 110 degrees

Markos C, Stefani A, Nielsen K, Rasmussen HK, Yuan W, Bang O

Optics Express, 2013; 21:4758-4765

2-10 μm mid-infrared supercontinuum generation in As2Se3 photonic crystal fiber

Yuan W^†

Optics Express, 2013; 21:4758-4765

Tunable polymer fiber Bragg grating (FBG) inscription: fabrication of dual-FBG temperature compensated polymer optical fiber strain sensors

Yuan W^†, Stefani A, Bang O

Photonics Technology Letters, 2012; 24: 401-403

Nonlinear fiber-optic strain sensor based on four-wave mixing in microstructured optical fiber

Gu B, Yuan W, Frosz MH, Zhang AP, He S, Bang O

Optics Letters, 2012; 37:794-796

High sensitivity polymer optical fiber Bragg grating based accelerometer

Stefani A, Andresen S, Yuan W, Herholdt-Rasmussen N, Bang O

Photonics Technology Letters, 2012; 24:763-765

Dynamic characterization of polymer optical fibres

Stefani A, Andresen S, Yuan W, Bang O

IEEE Sensors Journal, 2012; 10:3047-3053

Improved thermal and strain performance of annealed polymer optical fiber Bragg gratings

Yuan W^†, Stefani A, Bache M, Jacobsen T, Rose B, Herholdt-Rasmussen N, Nielsen FK, Andresen S, Sørensen OB, Hansen KS, Bang O

Optics Communications, 2011; 284:176-182

Optical fibre Bragg grating recorded in TOPAS cyclic olefin copolymer

Johnson IP, Yuan W, Stefani A, Nielsen K, Rasmussen HK, Khan L, Webb DJ, Kalli K, Bang O

Electronics Letters, 2011; 47:271 – 272

A reason to Bragg

Johnson IP, Yuan W, Stefani A, Nielsen K, Rasmussen HK, Khan L, Webb DJ, Kalli K, Bang O

Electronics Letters, 2011; 47:228

Narrow bandwidth 850nm fiber Bragg grating in few-mode polymer optical fibers

Stefani A, Yuan W, Markos C., Bang O

Photonics Technology Letters, 2011; 23:660-662

Label-free biosensing with high sensitivity in dual-core microstructured polymer optical fibers

Markos C, Yuan W, Vlachos K, Town GE, Bang O

Optics Express, 2011; 19:7790-7798

Optical fiber milled by focused ion beam and its application for Fabry-Pérot refractive index sensor

Yuan W, Wang F, Savenko A, Petersen DH, Bang O

Review of Scientific Instrument, 2011; 82: 076103-076105

Selective filling of photonic crystal fibers using focused ion beam milled microchannels

Wang F, Yuan W^†, Hansen O, Bang O

Optics Express, 2011; 19:17585-17590

Humidity insensitive TOPAS polymer fiber Bragg grating sensor

Yuan W, Khan L, Webb DJ, Kalli K, Rasmussen HK, Stefani A, Bang O

Optics Express, 2011; 19:19731-19739

Temperature compensated strain sensor based on cascaded Sagnac interferometers and all-solid birefringent hybrid photonic crystal fibers

Gu B, Yuan W, He S, Bang O

IEEE Sensors Journal, 2011; 99:1-6

Microstructured optical fiber refractive index sensor

Town GE, Yuan W, McCosker R, Bang O

Optics Letters, 2010; 35:856-858

Refractive index sensing in an all-solid twin-core photonic bandgap fiber

Yuan W^†, Town GE, Bang O

IEEE Sensors Journal, 2010; 10:1192-1199

Thermal tunability of photonic bandgaps in liquid crystal infiltrated microstructured polymer optical fibers

Yuan W^†, Wei L, Alkeskjold TT, Bjarklev AO, Bang O

Optics Express, 2009; 17:19356-19364

Surface-enhanced Raman scattering biosensor for DNA detection on nanoparticle island substrates

Yuan W, Ho HP, Lee R, Kong SK

Applied Optics, 2009; 48:4329-4337

Polarization-sensitive surface plasmon enhanced ellipsometry biosensor using the photoelastic modulation technique

Yuan W, Ho HP, Wu SY, Suen YK, Kong SK

Sensors and Actuators A: Physical, 2009; 151:23-28

Real-time protein biosensor arrays based on surface plasmon resonance differential phase imaging

Wong CL, Ho HP, Suen YK, Kong SK, Chen QL, Yuan W, Wu SY

Biosensors and Bioelectronics, 2008; 24:606-612

Two dimensional biosensor arrays based on SPR phase imaging

Wong CL, Ho HP, Yu TT, Suen YK, Chow W, Wu SY, Law WC, Yuan W, Li WJ, Kong SK, Lin CL

Applied Optics, 2007; 46:2325-2332

Surface plasmon resonance biosensor incorporated in a Michelson interferometer with enhanced sensitivity

Yuan W, Ho HP, Wong CL, Kong SK, Lin CL

IEEE Sensors Journal, 2007; 7:70-73

Sensitivity enhancement based on application of multi-pass interferometry in phase-sensitive surface plasmon resonance biosensor

Ho HP, Yuan W, Wong CL, Wu SY, Suen YK, Kong SK, Lin CL

Optics Communications, 2007; 275:491-496

Improving sensitivity limit of surface plasmon resonance biosensors by detecting mixed interference signals

Yuan W, Ho HP, Suen YK, Kong SK, Lin CL

Applied Optics, 2007; 46:8068-8073