@comment
@comment Journal Papers
@comment

@article{HDAC8-ICB_ScienceTranslationalMedicine2021,
	author		= "W Yang and Y Feng and J Zhou and OK Cheung and JQ Cao and J Wang and WS Tang and YL Tu and LL Xu and F Wu and Z Tan and H Sun and Y Tian and J Wong and PB Lai and SL Chan and AW Chan and P Tan and Z Chen and JJ Sung and KYL Yip and KF To and ASL Cheng",
	title		= "Enhancer Reprogramming by Selective {HDAC8} Inhibition Potentiates {T} Cell Infiltration and Durable Antitumor Efficacy of {PD-L1} Blockade",
	journal		= "Science Translational Medicine",
	year		= "2021",
	note		= "(in press)"}

@article{MYBPHL_ScientificReports2021,
	author		= "Kwan Yeung Wong and Gareth J. Morgan and Eileen M. Boyle and Alfred Sze Lok Cheng and Kevin Yuk-Lap Yip and Chor Sang Chim",
	title		= "A Proof-of-Concept Study for the Pathogenetic Role of Enhancer Hypomethylation of {MYBPHL} in Multiple Myeloma",
	journal		= "Scientific Reports",
	volume		= "11",
	pages		= "7009",
	year		= "2021"}

@article{HorseshoeCrab_CommunicationsBiology2021,
	author		= "Wenyan Nong and Zhe Qu and Yiqian Li and Tom Barton-Owen and Annette Y.P. Wong and Ho Yin Yip and Hoi Ting Lee and Satya Narayana and Tobias Baril and Thomas Swale and Jianquan Cao and Ting Fung Chan and Hoi Shan Kwan and Sai Ming Ngai and Gianni Panagiotou and Pei-Yuan Qian and Jian-Wen Qiu and Kevin Y. Yip and Noraznawati Ismail and Siddhartha Pati and Akbar John and Stephen S. Tobe and William G. Bendena and Siu Gin Cheung and Alexander Hayward and Jerome H.L. Hui",
	title		= "Horseshoe Crab Genomes Reveal the Evolutionary Fates of Genes and Micro{RNA}s after Three Rounds (3R) of Whole Genome Duplication",
	journal		= "Communications Biology",
	volume		= "4",
	pages		= "83",
	year		= "2021"}

@article{G9a_CellReports2020,
	author		= "Qinghong Jiang and Julie Y. J. Ang and Ah Young Lee and Qin Cao and Kelly Y. Li and Kevin Y. Yip and Danny C. Y. Leung",
	title		= "G9a Plays Distinct Roles in Maintaining {DNA} Methylation, Retrotransposon Silencing and Chromatin Looping",
	journal		= "Cell Reports",
	volume		= "33",
	issue		= "4",
	pages		= "108315",
	year		= "2020"}

@article{MARVEL_GenomeResearch2020,
	author		= "Alexander Xi Fu and Kathy Nga-Chu Lui and Clara Sze-Man Tang and Ray Kit Ng and Frank Pui-Ling Lai and Sin-Ting Lau and Zhixin Li and Maria-Merc{\`e} Garcia-Barcelo and Pak-Chung Sham and Paul Kwong-Hang Tam and Elly Sau-Wai Ngan and Kevin Y. Yip",
	title		= "Whole-Genome Analysis of Noncoding Genetic Variations Identifies Multi-Scale Regulatory Element Perturbations Associated with Hirschsprung Disease",
	journal		= "Genome Research",
	volume		= "30",
	issue		= "11",
	pages		= "1618--1632",
	year		= "2020"}

@article{CQF-deNoise_Bioinformatics2020,
	author		= "Christina Huan Shi and Kevin Y. Yip",
	title		= "A General Near-Exact K-mer Counting Method with Low Memory Consumption Enables De Novo Assembly of 106x Human Sequence Data in 2.7 Hours",
	journal		= "Bioinformatics",
	volume		= "36",
	issue		= "S2",
	pages		= "i625--i633",
	year		= "2020"}

@article{GEEK_NatureMachineIntelligence2020,
	author		= "Qin Cao and Zhenghao Zhang and Alexander Xi Fu and Qiong Wu and Tin-Lap Lee and Eric Lo and Alfred S. L. Cheng and Chao Cheng and Danny Leung and Kevin Y. Yip",
	title		= "A Unified Framework for Integrative Study of Heterogeneous Gene Regulatory Mechanisms",
	journal		= "Nature Machine Intelligence",
	year		= "2020",
	volume		= "2",
	issue		= "8",
	pages		= "447--456",
	year		= "2020"}

@article{Jellyfish_NatureCommunications2020,
	author		= "Wenyan Nong and Jianquan Cao and Yiqian Li and Zhe Qu and Thomas C.N. Leung and Jin Sun and Thomas Swale and Ho Yin Yip
and Pei Yuan Qian and Jian-Wen Qiu and Hoi Shan Kwan and William Bendena and Stephen Tobe and Ting Fung Chan and Kevin Y. Yip and Ka Hou Chu and Sai Ming Ngai and Karl YK Tsim and Peter W.H. Holland and Jerome H.L. Hui",
	title		= "Jellyfish Genomes Reveal Distinct Homeobox Gene Clusters and Conservation of Small {RNA} Processing",
	journal		= "Nature Communications",
	volume		= "11",
	number		= "3051",
	year		= "2020"}

@article{MatchedFilter_NatureMethods2020,
	author		= "Anurag Sethi and Mengting Gu and Emrah Gumusgoz and Landon Chan and Koon-Kiu Yan and Joel Rozowsky and Iros Barozzi and Veena Afzal and Jennifer Akiyama and Ingrid Plajzer-Frick and Chengfei Yan and Catherine Pickle and Momoe Kato and Tyler Garvin and Quan Pham and Anne Harrington and Brandon Mannion and Elizabeth Lee and Yoko Fukuda-Yuzawa and Axel Visel and Diane E. Dickel and Kevin Yip and Richard Sutton and Len A.  Pennacchio and Mark Gerstein",
	title		= "Supervised Enhancer Prediction with Epigenetic Pattern Recognition and Targeted Validation",
	journal		= "Nature Methods",
	volume		= "17",
	number		= "7",
	pages		= "807--814",
	year		= "2020"}

@article{ENCODEC_NatureCommunications2020,
	author		= "Jing Zhang and Donghoon Lee and Vineet Dhiman and Peng Jiang and Jie Xu and Patrick McGillivray and Hongbo Yang and Jason Liu and William Meyerson and Declan Clarke and Mengting Gu and Shantao Li and Shaoke Lou and Jinrui Xu and Lucas Lochovsky and Matthew Ung and Lijia Ma and Grace Yu and Qin Cao and Arif Harmanci and Koon-Kiu Yan and Anurag Sethi and Gamze G{\"u}rsoy and Michael Schoenberg and Joel Rozowsky and Jonathan Warrell and Prashant Emani and Flynn Chen and Yucheng Yang and Timur Galeev and Xiangmeng Kong and Shuang Liu and Xiaotong Li and Jayanth Krishnan and Yanlin Feng and Juan Carlos Rivera-Mulia and Jessika Adrian and James Broach and Michael Bolt and Jennifer Moran and Dominic Fitzgerald and Vishnu Dileep and Tingting Liu and Shenglin Mei and Takayo Sasaki and Claudia Trevilla-Garcia and Su Wang and Yanli Wang and Chongzhi Zang and Daifeng Wang and Robert Klein and Michael Snyder and David Gilbert and Kevin Yip and Chao Cheng and Feng Yue and Xiaole Liu and Kevin White and Mark Gerstein",
	title		= "An integrative {ENCODE} Resource for Cancer Genomics",
	journal		= "Nature Communications",
	volume		= "11",
	number		= "3696",
	year		= "2020"}

@article{glk_BiB2019,
	author		= "Chenyang Hong and Kevin Y. Yip",
	title		= "Flexible K-mers with Variable-Length Indels for Identifying Binding Sequences of Protein Dimers",
	journal		= "Briefings in Bioinformatics",
	volume		= "21",
	issue		= "5",
	pages		= "1787--1797",
	year		= "2020"}

@article{OMMA_GigaScience2019,
	author		= "Alden King-Yung Leung and Melissa Chun-Jiao Liu and Le Li and Yvonne Yuk-Yin Lai and Catherine Chu and Pui-Yan Kwok and Pak-Leung Ho and Kevin Y Yip and Ting-Fung Chan",
	title		= "{OMMA} Enables Population-scale Analysis of Complex Genomic Features and Phylogenomic Relationships from Nanochannel-based Optical Maps",
	journal		= "Giga Science",
	volume		= "8",
	issue		= "7",
	pages		= "giz079",
	year		= "2019"}

@article{EnhancerDefinition_BiB2020,
	author		= "Edwin Yu-Kiu Ho and Qin Cao and Mengting Gu and Ricky Wai-Lun Chan and Qiong Wu and Mark Gerstein and Kevin Y. Yip",
	title		= "Shaping the Nebulous Enhancer in the Era of High-Throughput Assays and Genome Editing",
	journal		= "Briefings in Bioinformatics",
	volume		= "21",
	issue		= "3",
	pages		= "836--850",
	year		= "2020"}

@article{OMPopulation_NatureCommunications2019,
	author		= "Michal Levy-Sakin and Steven Pastor and Yulia Mostovoy and Le Li and Alden KY Leung and Jennifer McCaffrey and Eleanor Young and Ernest T Lam and Alex R Hastie and Karen HY Wong and Claire YL Chung and Walfred Ma and Justin Sibert and Ramakrishnan Rajagopalan and Nana Jin and Eugene YC Chow and Catherine Chu and Annie Poon and Chin Lin and Ahmed Naguib and Wei-Ping Wang and Han Cao and Ting-Fung Chan and Kevin Y Yip and Ming Xiao and Pui-Yan Kwok",
	title		= "Genome Maps Across 26 Human Populations Reveal Population-specific Patterns of Structural Variation",
	journal		= "Nature Communications",
	volume		= "10",
	pages		= "1025",
	year		= "2019"}

@article{5hmCModeling_GenomeResearch2019,
	author		= "Le Li and Yuwei Gao and Qiong Wu and Alfred S. L. Cheng and Kevin Y. Yip",
	title		= "New Guidelines for {DNA} Methylome Studies Regarding 5-hydroxymethylcytosine for Understanding Transcriptional Regulation",
	journal		= "Genome Reserach",
	volume		= "29",
	issue		= "4",
	pages		= "543--553",
	year		= "2019"}

@article{CEBPBEnhancer_NatureCommunications2019,
	author		= "Lei Xiong and Feng Wu and Qiong Wu and Liangliang Xu and Otto K. Cheung and Wei Kang and Myth T. Mok and Lemuel L. Szeto and Cheuk-Yin Lun and Raynmond W. Lung and Jinglin Zhang and Ken H. Yu and Sau-Dan Lee and Guangcun Huang and Chiou-Miin Wang and Joseph Liu and Zhuo Yu and Dae-Yeul Yu and Bo Feng and Jian-Liang Chou and Wan-Hong Huang and Yue-Sun Cheung and Paul B. Lai and Patrick Tan and Nathalie Wong and Michael W. Chan and Tim H. Huang and Kevin Y. Yip and Alfred S. Cheng and Ka-Fai To",
	title		= "Aberrant Enhancer Hypomethylation Contributes to Hepatic Carcinogenesis through Global Transcriptional Reprogramming",
	journal		= "Nature Communications",
	volume		= "10",
	number		= "335",
	year		= "2019"}

@article{scParaSeq_IJBCB2019,
	author		= "Yan Qian and Jinyue Liao and Ashley Hoi Ching Suen and Annie Wing Tung Lee and Hoi Sze Chung and Nelson Leung Sang Tang and King Lau Chow and Qin Cao and Yuk Lap Yip and Tak Yeung Leung and Wai-Yee Chan and David Yiu Leung Chan and Tin Chiu Li and Tin-LapLee",
	title		= "Comparative Analysis of Single-Cell Parallel Sequencing Approaches in Oocyte Application",
	journal		= "The International Journal of Biochemistry and Cell Biology",
	volume		= "107",
	pages		= "1--5",
	year		= "2019"}

@article{BACE2_Gastroenterology2018,
	author		= "Clara Sze-man Tang and Peng Li and Frank Pui-Ling Lai and Alexander Xi Fu and Sin-Ting Lau and Man Ting So and Kathy Nga-Chu Lui and Zhixin Li and Xuehan Zhuang and Michelle Yu and Xuelai Liu and Ngoc
D Ngo and Xiaoping Miao and Xi Zhang and Bin Yi and Shaotao Tang and Xiaobing Sun and Furen Zhang and Hong Liu and Qiji Liu and Ruizhong Zhang and Hualong Wang and Liuming Huang and Xiao Dong and Jinfa Tou and Kathy SE Cheah
and Wanling Yang and Zhenwei Yuan and Kevin Yuk-lap Yip and Pak-Chung Sham and Paul Kwang-Hang Tam and Maria-Mercè Garcia-Barcelo and Elly Sau-Wai Ngan",
	title		= "Identification of Genes Associated with Hirschsprung Disease, based on Whole-Genome Sequence Analyais, and Potential Effects on Enteric Nervous System Development",
	journal		= "Gastroenterology",
	volume		= "155",
	issue		= "6",
	pages		= "1908--1922.e5",
	year		= "2018"}

@article{NPCLines_NatureCommunications2018,
	author		= "Weitao Lin and Yim Ling Yip and Lin Jia and Wen Deng and Hong Zheng and Wei Dai and Josephine Mun Yee Ko and Kwok Wai Lo and Grace Tin Yun Chung and Kevin Y. Yip and Sau-Dan Lee and Johnny Sheung-Him
Kwan and Jun Zhang and Tengfei Liu and Jimmy Yu-Wai Chan and Dora Lai-Wan Kwong and Victor Ho-Fun Lee and John Malcolm Nicholls and Pierre Busson and Xuefeng Liu and Alan Kwok Shing Chiang and Kwai Fung Hui and Hin Kwok and
Siu Tim Cheung and Yuk Chun Cheung and Chi Keung Chan and Bin Li and Annie Lai-Man Cheung and Pok Man Hau and Yuan Zhou and Chi Man Tsang and Jaap Middeldorp and Honglin Chen and Maria Li Lung and Sai Wah Tsao",
	title		= "Establishment and Characterization of New Tumor Xenografts and Cancer Cell Lines from EBV-Positive Nasopharyngeal Carcinoma",
	journal		= "Nature Communications",
	volume		= "9",
	pages		= "4663",
	year		= "2018"}

@article{IGFBP4_NAR2018,
	author		= "Ying-Ying Lee and Myth Mok and Wei Kang and Weiqin Yang and Wenshu Tang and Feng Wu and Liangliang Xu and Mingfei Yan and Zhou Yu and Sau Dan Lee and Joanna Tong and Yue-Sun Cheung and Paul Lai and Dae-Yeul Yu and Qianben Wang and Grace Wong and Andrew Chan and Kevin Yuk-Lap Yip and Ka-Fai To and Alfred SL Cheng",
	title		= "Loss of Tumor Suppressor {IGFBP4} Drives Epigenetic Reprogramming in Hepatic Carcinogenesis",
	journal		= "Nucleic Acids Research",
	volume		= "46",
	issue		= "17",
	pages		= "8832--8847",
	year		= "2018"}

@article{Toehold_Bioinformatics2018,
	author		= "Andrew Ching-Yuet To and David Ho-Ting Chu and Angela Ruoning Wang and Frances Cheuk-Yau Li and Alan Wai-On Chiu and Daisy Yuwei Gao and Chung Hang Jonathan Choi and Siu-Kai Kong and Ting-Fung Chan and King-Ming Chan and Kevin Y. Yip",
	title		= "A Comprehensive Web Tool for Toehold Switch Design",
	journal		= "Bioinformatics",
	volume		= "34",
	issue		= "16",
	pages		= "2862--2864",
	year		= "2018"}

@article{EpiInt_Bioinformatics2018,
	author		= "Danny Kit-Sang Yip and Landon L. Chan and Iris K. Pang and Wei Jiang and Nelson L. S. Tang and Weichuan Yu and Kevin Y. Yip",
	title		= "A Network Approach to Exploring the Functional Basis of Gene-Gene Epistatic Interactions in Disease Susceptibility",
	journal		= "Bioinformatics",
	year		= "2018",
	volume		= "34",
	issue		= "10",
	pages		= "1741--1749",
	year		= "2018"}

@article{ATM_JPathology2018,
	author		= "Raymond W-M Lung and Pok-Man Hau and Ken H-O Yu and Kevin Y. Yip and Joanna H-M Tong and W-P Chak and Anthony W-H Chan and Edith K-Y Tin and Jesse C-S Pang and Ka-Hei Lam and Johnny S-H Kwan and Angela K-F Lo and Shuk-Ling Chau and Pierre Busson and Lawrence S. Young and Lee-Fah Yap and Sai-Wah Tsao and Ka-Fai To and Kwok-Wai Lo",
	title		= "{EBV}-Encoded {miRNAs} Target {ATM}-Mediated Response in Nasopharyngeal Carcinoma",
	journal		= "The Journal of Pathology"
	volume		= "244",
	issue		= "4",
	pages		= "394--407",
	year		= "2018"}

@article{OMSV_GenomeBiology2017,
	author		= "Le Li and Alden King-Yung Leung and Tsz-Piu Kwok and Yvonne Y. Y. Lai and Iris K. Pang and Grace Tin-Yun Chung and Angel C. Y. Mak and Annie Poon and Catherine Chu and Menglu Li and Jacob J. K. Wu and Ernest T. Lam and Han Cao and Chin Lin and Justin Sibert and Siu-Ming Yiu and Ming Xiao and Kwok-Wai Lo and Pui-Yan Kwok and Ting-Fung Chan and Kevin Y Yip",
	title		= "OMSV Enables Accurate and Comprehensive Identification of Large Structural Variations from Nanochannel-based Single-Molecule Optical Maps",
	journal		= "Genome Biology",
	volume		= "18",
	pages		= "230",
	year		= "2017"}

@article{START_BMCGenomics2017,
	author		= "Xinjie Zhu and Qiang Zhang and Eric Dun Ho and Ken Hung-On Yu and Chris Liu and Tim H. Huang and Alfred Sze-Lok Cheng and Ben Kao and Eric Lo and Kevin Y. Yip",
	title		= "{START}: A System for Flexible Analysis of Hundreds of Genomic Signal Tracks in Few Lines of {SQL}-like Queries",
	journal		= "{BMC} Genomics",
	volume		= "18",
	number		= "749",
	year		= "2017"}

@article{JEME_NatureGenetics2017,
	author		= "Qin Cao and Christine Anyansi and Xihao Hu and Liangliang Xu and Lei Xiong and Wenshu Tang and Myth T S Mok and Chao Cheng and Xiaodan Fan and Mark Gerstein and Alfred S L Cheng and Kevin Y Yip",
	title		= "Reconstruction of Enhancer¡VTarget Networks in 935 Samples of Human Primary Cells, Tissues and Cell Lines",
	journal		= "Nature Genetics",
	year		= "2017",
	volume		= "49",
	number		= "10",
	pages		= "1428--1436",
	year		= "2017"}

@article{OMTools_Bioinformatics2017,
	author		= "Alden King-Yung Leung and Nana Jin and Kevin Y. Yip and Ting-Fung Chan",
	title		= "OMTools: A Software Package for Visualizing and Processing Optical Mapping Data",
	journal		= "Bioinformatics",
	volume		= "33",
	issue		= "18",
	pages		= "2933--2935",
	year		= "2017"}

@article{Unicorn_ScientificReports2016,
	author		= "Le Li and Kevin Y. Yip",
	title		= "Integrating Information in Biological Ontologies and Molecular Networks to Infer Novel Terms",
	journal		= "Scientific Reports",
	volume		= "6",
	number		= "39237",
	year		= "2016"}

@article{IHEC_Cell2016,
	author		= "Hendrik G. Stunnenberg and The International Human Epigenome Consortium and Martin Hirst",
	title		= "The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery",
	journal		= "Cell",
	volume		= "167",
	issue		= "5",
	pages		= "1145--1149",
	year		= "2016"}

@article{NPCExome_NatureCommunications2017,
	author		= "Yvonne Y Li and Grace Tin-Yun Chung and Vivian W.Y. Lui and Ka-Fai To and Brigette Buig-Yue Ma and Chit Chow and John Kong-Sang Woo and Kevin Y. Yip and Jeongsun Seo and Edwin Pun Hui and Michael Ko-Fung Mak and Maria Rusan and Nicole G. Chau and Yvonne Yan-Yan Or and Marcus Hung-Nam Law and Peggy Pui-Ying Law and Zoey Wing-Yee Liu and Hoi Lam Ngan and Krista R. Verhoeft and Peony H.Y. Poon and Seong-Keun Yoo and Jong-Yeon Shin and Sau-Dan Lee and Samantha Wei-Man Lun and Anthony Wing-Hung Chan and Jason Ying-Kuen Chan and Paul Bo-San Lai and Choi-Yi Fung and Suet-Ting Hung and Lin Wang Lin and Ann Margaret V. Chang and Simion I. Chiosea and Matthew Louis Hedberg and Sai-Wah Tsao and Charles Andrew van Hasselt and Anthony Tak-Cheung Chan and Jennifer R. Grandis and Peter S. Hammerman and Kwok-Wai Lo",
	title		= "Exome and Genome Sequencing of Nasopharynx Cancer Identifies {NF-kB} Pathway Activating Mutations",
	journal		= "Nature Communications",
	volume		= "8",
	number		= "14121",
	year		= "2017"}

@article{T2DInteractome_ScientificReports2016,
	author		= "Jing-Woei Li and Heung Man Lee and Ying Wang and Amy Hin Yan Tong and Kevin Y. Yip and Stephen Kwok-Wing Tsui and Si Lok and Risa Ozaki and Andrea Luk and Alice Kong and Wingyee So and Ronald Ma and Juliana Chan and Ting Fung Chan",
	title		= "Interactome-Transcriptome Analysis Discovers Signatures Complementary to {GWAS} Loci of Type 2 Diabetes",
	journal		= "Scientific Reports",
	volume		= "6",
	number		= "35228",
	year		= "2016"}

@article{OMBlast_Bioinformatics2016,
	author		= "Alden King-Yung Leung and Tsz-Piu Kwok and Raymond Wan and Ming Xiao and Pui-Yan Kwok and Kevin Y. Yip and Ting-Fung Chan",
	title		= "{OMBlast}: Alignment Tool for Optical Mapping using a Seed-and-Extend Approach",
	journal		= "Bioinformatics",
	volume		= "33",
	issue		= "3",
	pages		= "311--319",
	year		= "2017"}

@article{BNMF_Bioinformatics2016,
	author		= "Xihao Hu and Christina Huan Shi and Kevin Y. Yip",
	title		= "A Novel Method for Discovering Local Spatial Clusters of Genomic Regions with Functional Relationships from DNA Contact Maps",
	journal		= "Bioinformatics",
	year		= "2016",
	volume		= "32",
	issue		= "12",
	pages		= "i111--i120",
	year		= "2016"}

@article{YY1_JPathology2016,
	author		= "Daisy P.F. Tsang and William K.K. Wu and Wei Kang and Ying-Ying Lee and Feng Wu and Zhuo Yu and Leu Xiong and Anthony W. Chan and Joanna H. Tong and Weiqin Yang and May S.M. Li and Suki S. Lau and Xiangchun Li and Sau-Dan Lee and Yihua Yang and Paul B.S. Lai and Dae-Yeul Yu and Gang Xu and Kwok-Wai Lo and Matthew T.V. Chan and Huating Wang and Tin L. Lee and Jun Yu and Nathalie Wong and Kevin Y. Yip and Ka-Fai To and Alfred S.L. Cheng",
	title		= "Yin Yang 1-Mediated Epigenetic Silencing of Tumor-Suppressive Micro{RNA}s Activates Nuclear Factor-kB in Hepatocellular Carcinoma",
	journal		= "The Journal of Pathology",
	volume		= "238",
	issue		= "5",
	pages		= "651--664",
	year		= "2016"}

@article{RNAStructProbRBPReview_BiB2016,
	author		= "Xihao Hu and Yang Wu and Zhi John Lu and Kevin Y. Yip",
	title		= "Analysis of Sequencing Data for Probing {RNA} Secondary Structures and Protein-{RNA} Binding in Studying Post-Transcriptional Regulations",
	journal		= "Briefings in Bioinformatics",
	volume		= "17",
	issue		= "6",
	pages		= "1032--1043",
	year		= "2016"}

@article{OMTrio_Genetics2016,
	author		= "Angel C. Y. Mak and Yvonne Y. Y. Lai and Ernest T. Lam and Tsz-Piu Kwok and Alden K. Y. Leung and Annie Poon and Yulia Mostovoy and Alex R. Hastie and William Stedman and Thomas Anantharaman and Warren Andrews and Xiang Zhou and Andy W. C. Pang and Heng Dai and Catherine Chu and Chin Lin and Jacob J. K. Wu and Catherine M. L. Li and Jing-Woei Li and Aldrin K. Y. Yim and Saki Chan and Justin Sibert and Zeljko Dzakula and Han Cao and Siu-Ming Yiu and Ting-Fung Chan and Kevin Y. Yip and Ming Xiao and Pui-Yan Kwok",
	title		= "Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays",
	journal		= "Genetics",
	volume		= "202",
	number		= "1",
	pages		= "351--362",
	year		= "2016"}
 
@article{RME_NAR2015,
	author		= "Yang Wu and Binbin Shi and Xinqiang Ding and Tong Liu and Xihao Hu and Kevin Y. Yip and Zheng Rong Yang and David H. Mathews and Zhi John Lu",
	title		= "Improved Prediction of RNA Secondary Structure by Integrating the Free Energy Model with Restraints Derived from Experimental Probing Data",
	journal		= "Nucleic Acids Research",
	volume		= "43",
	issue		= "15",
	pages		= "7247--7259",
	year		= "2015"}

@article{MouseContamination_BMCGenomics2014,
	author		= "Kai-Yuen Tso and Sau Dan Lee and Kwok-Wai Lo and Kevin Y. Yip",
	title		= "Are Special Read Alignment Strategies Necessary and Cost-Effective when Handling Sequencing Reads from Patient-Derived Tumor Xenografts?",
	journal		= "{BMC} Genomics",
	volume		= "15",
	number		= "1172",
	year		= "2014"}

@article{MTB_BMCGenomics2014,
	author		= "Danny Kit-Sang Yip and Iris K Pang and Kevin Y. Yip",
	title		= "Systematic Exploration of Autonomous Modules in Noisy Micro{RNA}-Target Networks for Testing the Generality of the {ceRNA} Hypothesis",
	journal		= "{BMC} Genomics",
	volume		= "15",
	number		= "1178",
	year		= "2014"}

@article{RNAfeature_NAR2015,
	author		= "Long Hu and Chao Di and Mingxuan Kai and Yu-Cheng T. Yang and Yang Li and Yunjiang Qiu and Xihao Hu and Kevin Y. Yip and Michael Q. Zhang and Zhi John Lu",
	title		= "A Common Set of Distinct Features that Characterize Noncoding RNAs across Multiple Species",
	journal		= "Nucleic Acids Research",
	volume		= "43",
	issue		= "1",
	pages		= "104--114",
	year		= "2015"}

@article{DNAStorage_Frontiers2014,
	author		= "Aldrin Kay-Yuen Yim and Chi-Shing Yu and Jing-Woei Li and Ada In-Chun Wong and Jacky F.C. Loo and King Ming Chan and S. K. Kong and Kevin Y. Yip and Tingfung Chan",
	title		= "The Essential Component in DNA-based Information Storage System: Robust Error-Tolerating Module",
	journal		= "Frontiers in Bioengineering and Biotechnology",
	volume		= "2",
	number		= "49",
	year		= "2014"}

@article{VAS_BMCGenomics2014,
	author		= "Eric Dun Ho and Qin Cao and Sau Dan Lee and Kevin Y. Yip",
	title		= "{VAS}: A Convenient Web Portal for Efficient Integration of Genomic Features with Millions of Genetic Variants",
	journal		= "{BMC} Genomics",
	volume		= "15",
	number		= "886",
	year		= "2014"}

@article{FunSeq2_GenomeBiolgoy2014,
	author		= "Yao Fu and Zhu Liu and Shaoke Lou and Jason Bedford and Xinmeng J Mu and Kevin Y Yip and Ekta Khurana and Mark Gerstein",
	title		= "{FunSeq2}: A Framework for Prioritizing Noncoding Regulatory Variants in Cancer",
	journal		= "Genome Biology",
	volume		= "15",
	issue		= "10",
	number		= "480",
	year		= "2014"}

@article{Methylation_GenomeBiology2014,
	author		= "Shaoke Lou and Heung-Man Lee and Hao Qin and Jing-Woei Li and Zhibo Gao and Xin Liu and Landon L. Chan and Vincent K. L. Lam and Wing-Yee So and Ying Wang and Si Lok and Jun Wang and Ronald C. W. Ma and Stephen Kwok-Wing Tsui and Juliana C. N. Chan and Ting-Fung Chan and Kevin Y. Yip",
	title		= "Whole-Genome Bisulfite Sequencing of Multiple Individuals Reveals Complementary Roles of Promoter and Gene Body Methylation in Transcriptional Regulation",
	journal		= "Genome Biology",
	volume		= "15",
	issue		= "7",
	number		= "408",
	year		= "2014"}

@article{modENCODE_Transcriptome2014,
	author		= "Mark B. Gerstein and Joel Rozowsky and Koon-Kiu Yan and Daifeng Wang and Chao Cheng and James B. Brown and Carrie A. Davis and LaDeana Hillier and Cristina Sisu and Jingyi Jessica Li and Baikang Pei and Arif O. Harmanci and Michael O. Duff and Sarah Djebali and Roger P. Alexander and Burak H. Alver and Raymond Auerbach and Kimberly Bell and Peter J. Bickel and Max E. Boeck and Nathan P. Boley and Benjamin W. Booth and Lucy Cherbas and Peter Cherbas and Chao Di and Alex Dobin and Jorg Drenkow and Brent Ewing and Gang Fang and Megan Fastuca and Elise A. Feingold and Adam Frankish and Guanjun Gao and Peter J. Good and Roderic Guig\'{o} and Ann Hammonds and Jen Harrow and Roger A. Hoskins and Cedric Howald and Long Hu and Haiyan Huang and Tim J. P. Hubbard and Chau Huynh and Sonali Jha and Dionna Kasper and Masaomi Kato and Thomas C. Kaufman and Robert R. Kitchen and Erik Ladewig and Julien Lagarde and Eric Lai and Jing Leng and Zhi Lu and Michael MacCoss and Gemma May and Rebecca McWhirter and Gennifer Merrihew and David M. Miller and Ali Mortazavi and Rabi Murad and Brian Oliver and Sara Olson and Peter J. Park and Michael J. Pazin and Norbert Perrimon and Dmitri Pervouchine and Valerie Reinke and Alexandre Reymond and Garrett Robinson and Anastasia Samsonova and Gary I. Saunders and Felix Schlesinger and Anurag Sethi and Frank J. Slack and William C. Spencer and Marcus H. Stoiber and Pnina Strasbourger and Andrea Tanzer and Owen A. Thompson and Kenneth H. Wan and Guilin Wang and Huaien Wang and Kathie L. Watkins and Jiayu Wen and Kejia Wen and Chenghai Xue and Li Yang and Kevin Yip and Chris Zaleski and Yan Zhang and Henry Zheng and Steven E. Brenner and Brenton R. Graveley and Susan E. Celniker and Thomas R. Gingeras and Robert Waterston",
	title		= "Comparative Analysis of the Transcriptome across Distant Species",
	journal		= "Nature",
	volume		= "512",
	number		= "7515",
	pages		= "445-448",
	year		= "2014"}

@article{ECplot_Bioinformatics2014,
	author		= "Alex Chun-Hong Fok and Sunny Siu-Nam Mok and Sau Dan Lee and Kevin Y. Yip",
	title		= "{ECplot}: An Online Tool for Making Standardized Plots from Large Datasets for Bioinformatics Publications",
	journal		= "Bioinformatics",
	volume		= "30",
	number		= "10",
	pages		= "1467--1468",
	year		= "2014"}

@article{KinaseSpecificity_MolecularCell2014,
	author		= "Catherine Chen and Byung Hak Ha and Anastasia F. Thevenin and Hua Jane Lou and Rong Zhang and Kevin Y. Yip and Jeffrey R. Peterson and Mark Gerstein and Philip M. Kim and Panagis Filippakopoulos and Stefan Knapp and Titus J. Boggon and Benjamin E. Turk",
	title		= "Identification of a Major Determinant for Serine-Threonine Kinase Phosphoacceptor Specificity",
	journal		= "Molecular Cell",
	volume		= "53",
	issue		= "1",
	pages		= "140--147",
	year		= "2014"}

@article{RNADomains_Bioinformatics2014,
	author		= "Xihao Hu and Thomas K. F. Wong and Zhi John Lu and Ting Fung Chan and Terrence Chi Kong Lau and Siu Ming Yiu and Kevin Y. Yip",
	title		= "Computational Identification of Protein Binding Sites on RNAs using High-Throughput RNA Structure-Probing Data",
	journal		= "Bioinformatics",
	volume		= "30",
	number		= "8",
	pages		= "1049--1055",
	year		= "2014"}

@article{NPCFusion_JPathology2013,
	author		= "Grace Tin-Yun Chung and Raymond Wai-Ming Lung and Angela Bik-Yu Hui and Kevin Yuk-Lap Yip and John Kong-Sang Woo and Chit Chow and Carol Yuen-Kwan Tong and Sau-Dan Lee and Jessie Wai-Fong Yuen and Samantha Wei-Man Lun and Ken Kai-Yuen Tso and Nathalie Wong and Sai-Wah Tsao and Timothy Tak-Chun Yip and Pierre Busson and Hyungtae Kim and Jeong-Sun Seo and Brian O'Sullivan and Fei-Fei Liu and Ka-Fai To and Kwok-Wai Lo",
	title		= "Identification of a Recurrent Transforming {UBR5}-{ZNF423} Fusion Gene in {EBV}-Associated Nasopharyngeal Carcinoma",
	journal		= "The Journal of Pathology",
	volume		= "231",
	issue		= "2",
	pages		= "158--167",
	year		= "2013"}

@article{EBVGenome_InfectiousAgentsAndCancer2013,
	author		= "Ken Kai-Yuen Tso and Kevin Y. Yip and Cathy Mak and Grace Tin-Yun Chung and Sau-Dan Lee and Siu-Tim Cheung and Ka-Fai To and Kwok-Wai Lo",
	title		= "Complete Genomic Sequence of Epstein-Barr Virus in Nasopharyngeal Carcinoma Cell Line C666-1",
	journal		= "Infectious Agents and Cancer",
	volume		= "8",
	issue		= "1",
	number		= "29",
	year		= "2013"}

@article{GenomeAnnotation_GenomeBiology2013,
	author		= "Kevin Y. Yip and Chao Cheng and Mark Gerstein",
	title		= "Machine Learning and Genome Annotation: A Match Meant to be?",
	journal		= "Genome Biology",
	volume		= "14",
	issue		= "5",
	number		= "205",
	year		= "2013"}

@article{ENCODEIntegrative_Nature2012,
	author		= "The {ENCODE} Project Consortium",
	title		= "An Integrated Encyclopedia of {DNA} Elements in the Human Genome",
	journal		= "Nature",
	volume		= "489",
	number		= "7414",
	pages		= "57--74",
	year		= "2012"}

@article{MetaTracks_GenomeBiology2012,
	author		= "Kevin Y. Yip and Chao Cheng and Nitin Bhardwaj and James B. Brown and Jing Leng and Anshul Kundaje and Joel Rozowsky and Ewan Birney and Peter Bickel and Michael Snyder and Mark Gerstein",
	title		= "Classification of Human Genomic Regions based on Experimentally-determined Binding Sites of More Than 100 Transcription-related Factors",
	journal		= "Genome Biology",
	volume		= "13",
	issue		= "9",
	number		= "R48",
	year		= "2012"}

@article{ENCODENets_Nature2012,
	author		= "Mark B. Gerstein and Anshul Kundaje and Manoj Hariharan and Stephen G. Landt and Koon-Kiu Yan and Chao Cheng and Xinmeng Jasmine Mu and Ekta Khurana and Joel Rozowsky and Roger Alexander and Renqiang Min and Pedro Alves and Alexej Abyzov and Nick Addleman and Nitin Bhardwaj and Alan P. Boyle and Philip Cayting and Alexandra Charos and David Z. Chen and Yong Cheng and Declan Clarke and Catharine Eastman and Ghia Euskirchen and Seth Frietze and Yao Fu and Jason Gertz and Fabian Grubert and Arif Harmanci and Preti Jain and Maya Kasowski and Phil Lacroute and Jing (Jane) Leng and Jin Lian and Hannah Monahan and Henriette O'Geen and Zhengqing Ouyang and E. Christopher Partridge and Dorrelyn Patacsil and Florencia Pauli and Debasish Raha and Lucia Ramirez and Timothy E. Reddy and Brian Reed and Minyi Shi and Teri Slifer and Jing Wang and Linfeng Wu and Xinqiong Yang and Kevin Y. Yip and Gili Zilberman-Schapira and Serafim Batzoglou and Arend Sidow and Peggy J. Farnham and Richard M. Myers and Sherman M. Weissman and Michael Snyder",
	title		= "Architecture of the Human Regulatory Network Derived from {ENCODE} Data",
	journal		= "Nature",
	volume		= "489",
	number		= "7414",
	pages		= "91--100",
	year		= "2012"}

@article{ExprModel_GenomeResearch2012,
	author		= "Chao Cheng and Roger Alexander and Renqiang Min and Jing Leng and Kevin Y. Yip and Joel Rozowsky and Koon-kiu Yan and Xianjun Dong and Sarah Djebali and Yijun Ruan and Carrie A Davis and Piero Carninci and Timo Lassman and Thomas R. Gingeras and Roderic Guig\'{o} Serra and Ewan Birney and Zhiping Weng and Michael Snyder and Mark Gerstein",
	title		= "Understanding Transcriptional Regulation by Integrative Analysis of Transcription Factor Binding Data",
	journal		= "Genome Research",
	volume		= "22",
	issue		= "9",
	pages		= "1658--1667",
	year		= "2012"}

@article{TCM_Diabetes2012,
	author		= "Hai-Lu Zhao and Yi Sui and Chun-Feng Qiao and Kevin Y. Yip and Ross K.K. Leung and Stephen K.W. Tsui and Harriet K.T. Wong and Xun Zhu and Jennifer J. Siu and Lan He and Jing Guan and Li-Zhong Liu and Heung-Man Lee and Hong-Xi Xu and Peter C.Y. Tong and Juliana C.N. Chan",
	title		= "Sustained Antidiabetic Effects of a Berberine-containing Chinese Herbal Medicine through Regulation of Hepatic Gene Expression",
	journal		= "Diabetes",
	volume		= "61",
	number		= "4",
	pages		= "933--943",
	year		= "2012"}

@article{YeastTF_GenomeBiology2011,
	author		= "Chao Cheng and Chong Shou and Kevin Y. Yip and Koon-Kiu Yan and Mark B. Gerstein",
	title		= "Genome-wide Analysis of Chromatin Features Identifies Chromatin-Sensitive and Chromatin-Insensitive Classes of Yeast Transcription Factors",
	journal		= "Genome Biology",
	volume		= "12",
	issue		= "11",
	number		= "R111",
	year		= "2011"}

@article{SDR_BMCBiology2011,
	author		= "Kevin Y. Yip and Lukas Utz and Simon Sitwell and Xihao Hu and Sachdev S. Sidhu and Benjamin E. Turk and Mark Gerstein and Philip M. Kim",
	title		= "Identification of Specificity Determining Residues in Peptide Recognition Domains using an Information Theoretic Approach Applied to Large-Scale Binding Maps",
	journal		= "{BMC} Biology",
	volume		= "9",
	number		= "53",
	year		= "2011"}

@article{OPSM_TKDE2011,
	author		= "Kevin Y. Yip and Ben Kao and Xinjie Zhu and Chun Kit Chui and Sau Dan Lee and David W. Cheung",
	title		= "Mining Order-Preserving Submatrices from Data with Repeated Measurements",
	journal		= "{IEEE} Transactions on Knowledge and Data Engineering ({TKDE})",
	volume		= "25",
	issue		= "7",
	pages		= "1587--1600",
	year		= "2013"}

@article{ENCODE101_PLoSBiology2011,
	author		= "The {ENCODE} Project Consortium",
	title		= "A User's Guide to the Encyclopedia of {DNA} Elements ({ENCODE})",
	journal		= "{PLoS} Biology",
	volume		= "9",
	issue		= "4",
	number		= "e1001046",
	year		= "2011"}

@article{ExprModel_GenomeBiology2011,
	author		= "Chao Cheng and Koon-Kiu Yan and Kevin Y. Yip and Joel Rozowsky and Roger Alexander and Chong Shou and Mark Gerstein",
	title		= "A Statistical Framework for Modeling Gene Expression using Chromatin Features with Application to {modENCODE} Datasets",
	journal		= "Genome Biology",
	volume		= "12",
	issue		= "2",
	number		= "R15",
	year		= "2011"}

@article{incRNA_GenomeResearch2011,
	author		= "Zhi John Lu and Kevin Y. Yip and Guilin Wang and Chong Shou and LaDeana W. Hillier and Ekta Khurana and Ashish Agarwal and Raymond Auerbach and Joel Rozowsky and Chao Cheng and Masaomi Kato and David M. Miller and Frank Slack and Michael Snyder and Robert H. Waterston and Valerie Reinke and Mark Gerstein",
	title		= "Prediction and Characterization of Non-coding RNAs in C. elegans by Integrating Conservation, Secondary Structure and High Throughput Sequencing and Array Data",
	journal		= "Genome Research",
	volume		= "21",
	number		= "2",
	pages		= "276--285",
	year		= "2011"}

@article{ACT_Bioinformatics2011,
	author		= "Justin Jee and Joel Rozowsky and Kevin Y. Yip and Lucas Lochovsky and Robert Bjornson and Guoneng Zhong and Zhengdong Zhang and Yutao Fu and Jie Wang and Zhiping Weng and Mark Gerstein",
	title		= "{ACT}: Aggregation and Correlation Toolbox for Analyses of Genome Tracks",
	journal		= "Bioinformatics",
	volume		= "27",
	number		= "8",
	pages		= "1152--1154",
	year		= "2011"}

@article{modENCODE_Science2010,
	author		= "Mark B. Gerstein and Zhi John Lu and Eric L. Van Nostrand and Chao Cheng and Bradley I. Arshinoff and Tao Liu and Kevin Y. Yip and Rebecca Robilotto and Andreas Rechtsteiner and Kohta Ikegami and Pedro Alves and Aurelien Chateigner and Marc Perry and Mitzi Morris and Raymond K. Auerbach and Xin Feng and Jing Leng and Anne Vielle and Wei Niu and Kahn Rhrissorrakrai and Ashish Agarwal and Roger P. Alexander and Galt Barber and Cathleen M. Brdlik and Jennifer Brennan and Jeremy Jean Brouillet and Adrian Carr and Ming-Sin Cheung and Hiram Clawson and Sergio Contrino and Luke O. Dannenberg and Abby F. Dernburg and Arshad Desai and Lindsay Dick and Andrea C. Dose and Jiang Du and Thea Egelhofer and Sevinc Ercan and Ghia Euskirchen and Brent Ewing and Elise A. Feingold and Reto Gassman and Peter J. Good and Phil Green and Francois Gullier and Michelle Gutwein and Mark S. Guyer and Lukas Habegger and Ting Han and Jorja G. Henikoff and Stefan R. Henz and Angie Hinrichs and Heather Holster and Tony Hyman and A. Leo Iniguez and Judith Janette and Morten Jensen and Masaomi Kato and W. James Kent and Ellen Kephart and Vishal Khivansara and Ekta Khurana and John K. Kim and Paulina Kolasinska-Zwierz and Eric C. Lai and Isabel Latorre and Amber Leahey and Suzanna Lewis and Paul Lloyd and Lucas Lochovsky and Rebecca F. Lowdon and Yaniv Lubling and Rachel Lyne and Michael MacCoss and Sebastian D. Mackowiak and Marco Mangone and Sheldon McKay and Desirea Mecenas and Gennifer Merrihew and David M. Miller III and Andrew Muroyama and John I. Murray and Siew-Loon Ooi and Hoang Pham and Taryn Phippen and Elicia A. Preston and Nikolaus Rajewsky and Gunnar Ratsch and Heidi Rosenbaum and Joel Rozowsky and Kim Rutherford and Peter Ruzanov and Mihail Sarov and Rajkumar Sasidharan and Andrea Sboner and Paul Scheid and Eran Segal and Hyunjin Shin and Chong Shou and Frank J. Slack and Cindie Slightam and Richard Smith and William C. Spencer and E.O. Stinson and Scott Taing and Teruaki Takasaki and Dionne Vafeados and Ksenia Voronina and Guilin Wang and Nicole L. Washington and Christina Whittle and Beijing Wu and Koon-Kiu Yan and Georg Zeller and Zheng Zha and Mei Zhong and Xingliang Zhou and modENCODE Consortium and Julie Ahringer and Susan Strome and Kristin C. Gunsalus and Gos Micklem and X. Shirley Liu and Valerie Reinke and Stuart K. Kim and LaDeana W. Hillier and Steven Henikoff and Fabio Piano and Michael Snyder and Lincoln Stein and Jason D. Lieb and Robert H. Waterston",
	title		= "Integrative Analysis of the Caenorhabditis elegans Genome by the {modENCODE} Project",
	journal		= "Science",
	volume		= "330",
	number		= "6012",
	pages		= "1775--1787",
	year		= "2010"}

@article{SmallMolecules_Cell2010,
	author		= "Xiyan Li and Tara A. Gianoulis and Kevin Y. Yip and Mark Gerstein and Michael Snyder",
	title		= "Extensive in vivo Metabolite-Protein Interactions Revealed by Large-Scale Systematic Analyses",
	journal		= "Cell",
	volume		= "143",
	number		= "4",
	pages		= "639--650",
	year		= "2010"}

@article{UKMeans_IS2011,
	author		= "Wang Kay Ngai and Ben Kao and Reynold Cheng and Michael Chau and Sau Dan Lee and David W. Cheung and Kevin Y. Yip",
	title		= "Metric and Trigonometric Pruning for Clustering of Uncertain Data in 2D Geometric Space",
	journal		= "Information Systems",
	volume		= "36",
	issue		= "2",
	pages		= "476--497",
	year		= "2011"}

@article{MembraneMetagenomics_GenomeResearch2010,
	author		= "Prianka V. Patel and Tara A. Gianoulis and Robert D. Bjornson and Kevin Y. Yip and Donald M. Engelman and Mark B. Gerstein",
	title		= "Analysis of Membrane Proteins in Metagenomics: Networks of Correlated Environmental Features and Protein Families",
	journal		= "Genome Research",
	volume		= "20",
	number		= "7",
	pages		= "960--971",
	year		= "2010"}

@article{DREAM3_PLoSONE2009,
	author		= "Kevin Y. Yip and Roger P. Alexander and Koon-Kiu Yan and Mark Gerstein",
	title		= "Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data",
	journal		= "{PLoS ONE}",
	volume		= "5",
	issue		= "1",
	number		= "e8121",
	year		= "2010"}

@article{MLL_BMCBioinformatics2009,
	author		= "Kevin Y. Yip and Philip M. Kim and Drew McDermott and Mark Gerstein",
	title		= "Multi-level Learning: Improving the Prediction of Protein, Domain and Residue Interactions by Allowing Information Flow between Levels",
	journal		= "{BMC} Bioinformatics",
	volume		= "10",
	number		= "241",
	year		= "2009"}

@article{UDT_TKDE2009,
	author		= "Smith Tsang and Ben Kao and Kevin Y. Yip and Wai-Shing Ho and Sau Dan Lee",
	title		= "Decision Trees for Uncertain Data",
	journal		= "{IEEE} Transactions on Knowledge and Data Engineering ({TKDE})",
	volume		= "23",
	number		= "1",
	pages		= "64--78",
	year		= "2011"}

@article{TSE_Bioinformatics2008,
	author		= "Kevin Y. Yip and Mark Gerstein",
	title		= "Training Set Expansion: An Approach to Improving the Reconstruction of Biological Networks from Limited and Uneven Reliable Interactions",
	journal		= "Bioinformatics",
	volume		= "25",
	number		= "2",
	pages		= "243-250",
	year		= "2009"}

@article{Web2.0_JAMIA2008,
	author		= "Matthew Scotch and Kevin Y. Yip and Kei-Hoi Cheung",
	title		= "Development of Grid-like Applications for Public Health using Web 2.0 Mashup Techniques",
	journal		= "Journal of the American Medical Informatics Association ({JAMIA})",
	volume		= "15",
	number		= "6",
	pages		= "783--786",
	year		= "2008"}

@article{Web2.0_JBI2008,
	author		= "Kei-Hoi Cheung and Kevin Y. Yip and Jeffrey P. Townsend and Matthew Scotch",
	title		= "{HCLS} 2.0/3.0: Health Care and Life Sciences Data Mashup Using Web 2.0/3.0",
	journal		= "Journal of Biomedical Informatics ({JBI})",
	volume		= "41",
	issue		= "5",
	pages		= "694--705",
	year		= "2008"}

@article{SSPC_IJDMB2008,
	author		= "Kevin Y. Yip and Lin Cheung and David W. Cheung and Liping Jing and Michael K. Ng",
	title		= "A Semi-supervised Approach to Projected Clustering with Applications to Microarray Data",
	journal		= "International Journal of Data Mining and Bioinformatics ({IJDMB})",
	volume		= "3",
	number		= "3",
	pages		= "229--259",
	year		= "2009"}

@article{Coevolution_Bioinformatics2008,
	author		= "Kevin Y. Yip and Prianka Patel and Philip M. Kim and Donald M. Engelman and Drew McDermott and Mark Gerstein",
	title		= "An Integrated System for Studying Residue Coevolution in Proteins",
	journal		= "Bioinformatics",
	volume		= "24",
	number		= "2",
	pages		= "290--292",
	year		= "2008"}

@article{EdgeOntology_TIBS2007,
	author		= "Long J. Lu and Andrea Sboner and Yuanpeng J. Huang and Hao Xin Lu and Tara A. Gianoulis and Kevin Y. Yip and Philip M. Kim and Gaetano T. Montelione and Mark B. Gerstein",
	title		= "Comparing Classical Pathways and Modern Networks: Towards the Development of an Edge Ontology",
	booktitle	= "Trends in Biochemical Sciences ({TIBS})",
	volume		= "32",
	number		= "7",
	pages		= "320--331",
	year		= "2007"}

@article{MPP_TKDD2007,
	author		= "Minghua Zhang and Ben Kao and David Cheung and Kevin Y. Yip",
	title		= "Mining Periodic Patterns with Gap Requirement from Sequences",
	booktitle	= "{ACM} Transaction on Knowledge Discovery from Data ({TKDD})",
	volume		= "1",
	number		= "2",
	note		= "article 7",
	year		= "2007"}

@article{LinkHub_BMCBioinformatics2007,
	author		= "Andrew K. Smith and Kei-Hoi Cheung and Kevin Y. Yip and Martin Schultz and Mark B. Gerstein",
	title		= "{LinkHub}: A Semantic Web System that Facilitates Cross-Database Queries and Information Retrieval in Proteomics",
	booktitle	= "{BMC} Bioinformatics",
	volume		= "8 (Suppl 3)",
	number		= "S5",
	year		= "2007"}

@article{OPSM_IJBRA2007,
	author		= "Lin Cheung and Kevin Y. Yip and David W. Cheung and Ben Kao and Michael K. Ng",
	title		= "On Mining Micro-array Data by {OPSM}",
	journal		= "International Journal of Bioinformatics Research and Applications ({IJBRA})",
	volume		= "3",
	number		= "1",
	pages		= "42--64",
	year		= "2007"}

@article{tYNA_Bioinformatics2006,
	author		= "Kevin Y. Yip and Haiyuan Yu and Philip M. Kim and Martin Schultz and Mark Gerstein",
	title		= "The {tYNA} Platform for Comparative Interactomics: A Web Tool for Managing, Comparing and Mining Multiple Networks",
	journal		= "Bioinformatics",
	volume		= "22",
	number		= "23",
	pages		= "2968--2970",
	year		= "2006"}

@article{PDS_DKE2006,
	author		= "Eric Lo and Kevin Y. Yip and King-Ip Lin and David W. Cheung",
	title		= "Progressive Skylining over Web-Accessible Databases",
	journal		= "Data & Knowledge Engineering ({DKE})",
	volume		= "57",
	number		= "2",
	year		= "2006"}

@article{YeastHub_Bioinformatics2005,
	author		= "Kei-Hoi Cheung and Kevin Y. Yip and Andrew Smith and Remko de Knikker and Andy Masiar and Mark Gerstein",
	title		= "{YeastHub}: A Semantic Web Use Case ofr Integrating Data in the Life Sciences Domain",
	journal		= "Bioinformatics",
	volume		= "21",
	number		= "Supp. 1",
	pages		= "i85--i96",
	year		= "2005"}

@article{CLUSTAG_Bioinformatics2005,
	author		= "S. I. Ao and Kevin Yip and Michael Ng and David Cheung and Pui-Yee Fong and Ian Melhado and Pak C Sham",
	title		= "{CLUSTAG}: Hierarchical Clustering and Graph Methods for Selecting Tag {SNP}s",
	journal		= "Bioinformatics",
	volume		= "21",
	number		= "8",
	pages		= "1735--1736",
	year		= "2005"}

@article{Biosphere_AppliedBioinformatics2004,
	author		= "Kei-Hoi Cheung and Remko de Knikker and Youjun Guo and Guoneng Zhong and Janet Hager and Kevin Y. Yip and Albert K. H. Kwan and Peter Li and David W. Cheung",
	title		= "Biosphere: the Interoperation of Web Services in Microarray Cluster Analysis",
	journal		= "Applied Bioinformatics",
	volume		= "3",
	number		= "4",
	pages		= "253--256",
	year		= "2004"}

@article{HARP_JBI2004,
	author		= "Kevin Y. Yip and David W. Cheung and Michael K. Ng and Kei-Hoi Cheung",
	title		= "Identifying Projected Clusters from Gene Expression Profiles",
	journal		= "Journal of Biomedical Informatics ({JBI})",
	volume		= "37",
	number		= "5",
	pages		= "345--357",
	year		= "2004"}

@article{HARP_TKDE2004,
	author		= "Kevin Y. Yip and David W. Cheung and Michael K. Ng",
	title		= "{HARP}: A Practical Projected Clustering Algorithm",
	journal		= "{IEEE} Transactions on Knowledge and Data Engineering ({TKDE})",
	volume		= "16",
	number		= "11",
	pages		= "1387--1397",
	year		= "2004"}

@article{Biosphere_BMCBioinformatics2004,
	author		= "Remko de Knikker and Youjun Guo and Jin-long Li and Albert K. H. Kwan and Kevin Y. Yip and David W. Cheung and Kei-Hoi Cheung",
	title		= "A Web Services Choreography Scenario for Interoperating Bioinformatics Applications",
	journal		= "{BMC} Bioinformatics",
	volume		= "5",
	number		= "25",
	year		= "2004"}

@article{HARP_IJAM2003,
	author		= "Kevin Y. Yip and Michael K. Ng and David W. Cheung",
	title		= "A Review on Projected Clustering Algorithms",
	journal		= "International Journal of Applied Mathematics",
	volume		= "13",
	number		= "1",
	pages		= "35--47",
	year		= "2003"}


@comment
@comment Conference/Workshop Proceedings:
@comment

@inproceedings{MTB_RECOMB_ISCB2013,
	author		= "Danny Kit-Sang Yip and Kevin Y. Yip",
	title		= "Systematic Exploration of Autonomous Modules in Noisy {MicroRNA}-Target Networks for Testing the Generality of the {ceRNA} Hypothesis",
	booktitle	= "Sixth Annual {RECOMB}/{ISCB} Conference on Regulatory and Systems Genomics, with {DREAM} Challenges",
	year		= "2013"}

@inproceedings{InSilicoNetworkReconstruction_DREAM3,
	author		= "Kevin Y. Yip and Roger P. Alexander and Koon-Kiu Yan and Mark Gerstein",
	title		= "Combining Multiple Models in Reconstructing in Silico Regulatory Networks",
	booktitle	= "The 5th Annual {RECOMB} Satellite on Regulatory Genomics, the 4th Annual {RECOMB} Satellite on Systems Biology, and the 3rd Annual {DREAM} Reverse Engineering Challenges",
	year		= "2008"}

@inproceedings{UDT_ICDE2009,
	author		= "Smith Tsang and Ben Kao and Kevin Y. Yip and Wai-Shing Ho and Sau Dan Lee",
	title		= "Decision Trees for Uncertain Data",
	booktitle	= "25st International Conference on Data Engineering ({ICDE}'09)",
	year		= "2009"}

@inproceedings{OPSM_ICDM2008,
	author		= "Chun Kit Chui and Ben Kao and Kevin Y Yip and Sau Dan Lee",
	title		= "Mining Order-Preserving Submatrices from Data with Repeated Measurements",
	booktitle	= "Proceedings of the 8th {IEEE} International Conference on Data Mining ({ICDM} 2008)",
	year		= "2008"}

@inproceedings{AudioRetrieval_ISM2008,
	author		= "Songhua Xu and Suchao Chen and Kevin Y. Yip and Francis C. M. Lau and Xueying Qin",
	title		= "A Two-Stage Audio Retrieval Method for Searching Unannotated Audio Clips",
	booktitle	= "Proceedings of the Tenth {IEEE} International Symposium on Multimedia",
	year		= "2008"}

@inproceedings{InputValidation_FDM2006,
	author		= "Kevin Y. Yip and Michael K. Ng and David W. Cheung",
	title		= "Input Validation for Semi-supervised Clustering",
	booktitle	= "Proceedings of the {ICDM} 2006 Workshop on Foundations of Data Mining and Novel Techniques in High Dimensional Structural and Unstructured Data",
	year		= "2006"}

@inproceedings{UKMeans_ICDM2006,
	author		= "Wang Kay Ngai and Ben Kao and Chun Kit Chui and Reynold Cheng and Michael Chau and Kevin Y Yip",
	title		= "Efficient Clustering of Uncertain Data",
	booktitle	= "Proceedings of the 6th {IEEE} International Conference on Data Mining ({ICDM} 2006)",
	year		= "2006"}

@inproceedings{LinkHub_SeS2006,
	author		= "Andrew K. Smith and Kei-Hoi Cheung and Kevin Y. Yip and Martin Schultz and Mark B. Gerstein",
	title		= "{LinkHub}: A Semantic Web System for Efficiently Handling Complex Graphs of Proteomics Identifier Relationships that Facilitates Cross-database Queries and Information Retrieval",
	booktitle	= "International Workshop on Semantic {e}-Science",
	year		= "2006"}

@inproceedings{SemBiosphere_PSB2006,
	author		= "Kevin Y. Yip and Peishen Qi and Martin Schultz and David W. Cheung and Kei-Hoi Cheung",
	title		= "{SemBiosphere}: A Semantic Web Approach to Recommending Microarray Clustering Services",
	booktitle	= "Pacific Symposium on Biocomputing",
	year		= "2006"}

@inproceedings{MPP_SIGMOD2005,
	author		= "Minghua Zhang and Ben Kao and David Cheung and Kevin Y. Yip",
	title		= "Mining Periodic Patterns with Gap Requirement from Sequences",
	booktitle	= "Proceedings of the 2005 {ACM} {SIGMOD} International Conference on Management of Data",
	pages		= "623--633",
	year		= "2005"}

@inproceedings{OPSM_BMDE2005,
	author		= "Lin Cheung and Kevin Y. Yip and David W. Cheung and Ben Kao and Michael K. Ng",
	title		= "On Mining Micro-Array Data by Order-Preserving Submatrix",
	booktitle	= "International Workshop on Biomedical Data Engineering ({BMDE})",
	year		= "2005"}

@inproceedings{SSPC_ICDE2005,
	author		= "Kevin Y. Yip and David W. Cheung and Michael K. Ng",
	title		= "On Discovery of Extremely Low-Dimensional Clusters using Semi-Supervised Projected Clustering",
	booktitle	= "21st International Conference on Data Engineering ({ICDE}'05)",
	pages		= "329--340",
	year		= "2005"}

@inproceedings{YeastHub_WSWLS2004,
	author		= "Kei-Hoi Cheung and Andrew Smith and Kevin Y. Yip and Michael Seringhaus and Shawn M. Douglas and Mark Gerstein",
	title		= "A Semantic Web Approach to Integrating Heterogeneous Yeast Genome Data",
	booktitle	= "{W3C} Workshop on Semantic Web for Life Sciences",
	year		= "2004"}

@inproceedings{HARP_BIBE2004,
	author		= "Kevin Y. Yip and David W. Cheung and Michael K. Ng and Kei-Hoi Cheung",
	title		= "Identifying Projected Clusters from Gene Expression Profiles",
	booktitle	= "Fourth {IEEE} Symposium on Bioinformatics and Bioengineering ({BIBE}'04)",
	pages		= "259--266",
	year		= "2004"}

@inproceedings{HARP_BIOKDD2003,
	author		= "Kevin Y. Yip and David W. Cheung and Michael K. Ng",
	title		= "A Highly-usable Projected Clustering Algorithm for Gene Expression Profiles",
	booktitle	= "{ACM} {SIGKDD} Workshop on Data Mining in Bioinformatics ({BIOKDD})",
	year		= "2003"}


@comment
@comment Book chapters
@comment

@inbook{SemanticWeb_Springer2007,
	author		= "Kei-Hoi Cheung and Andrew K. Smith and Kevin Y. L. Yip and Christopher J. O. Baker and Mark B. Gerstein",
	chapter		= "Semantic Web Approach to Database Integration in the Life Sciences",
	title		= "Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences",
	editor		= "C Baker and K Cheung",
	publisher	= "Springer, NY",
	year		= "2007"}


@comment
@comment Theses
@comment

@phdthesis{Networks_Yale2009,
	author		= "Yuk Lap Yip",
	title		= "Computational Reconstruction of Biological Networks",
	school		= "Yale University",
	month		= "May",
	year		= "2009"}

@mastersthesis{HARP_HKUCS2003,
	author		= "Kevin Yuk-Lap Yip",
	title		= "{HARP}: A Practical Projected Clustering Algorithm for Mining Gene Expression Data",
	school		= "Department of Computer Science, University of Hong Kong",
	note		= "\url{http://sunzi.lib.hku.hk/hkuto/record/B29634568}",
	month		= "December",
	year		= "2003"}


@comment
@comment Technical Reports
@comment

@techreport{OPSM_HKUCS2008,
	author		= "Chun Kit Chui and Ben Kao and Kevin Y Yip and Sau Dan Lee",
	title		= "Mining Order-Preserving Submatrices from Data with Repeated Measurements",
	institution	= "{HKU} {CS}",
	number		= "TR-2008-16",
	note		= "\url{http://www.cs.hku.hk/research/techreps/document/TR-2008-16.pdf}",
	month		= "September",
	year		= "2008"}

@techreport{InstanceLevelRelationships_YaleCS2006,
	author		= "Kevin Y. Yip",
	title		= "Learning from Instance-level Relationships",
	institution	= "{Yale} {CS}",
	note		= "\url{http://www.cs.hku.hk/~ylyip/papers/InstanceLevelRelationships_YaleCS2006.pdf}",
	month		= "March",
	year		= "2006"}

@techreport{SSPC_HKUCS2004,
	author		= "Kevin Y. Yip and David W. Cheung and Michael K. Ng",
	title		= "On Discovery of Extremely Low-Dimensional Clusters using Semi-Supervised Projected Clustering",
	institution	= "{HKU} {CS}",
	number		= "TR-2004-08",
	note		= "\url{http://www.cs.hku.hk/research/techreps/document/TR-2004-08.pdf}",
	month		= "June",
	year		= "2004"}


@commnet
@comment Others
@comment

@article{TongueSarcoma_F1000Research2018,
	author		= "Jason Y. K. Chan and Peony Hiu Yan Poon and Yong Zhang and Cherrie W. K. Ng and Wen Ying Piao and Meng Ma and Kevin Y. Yip and Amy B. W. Chan and Vivian Wai Yan Lui",
	title		= "Exome Sequencing Reveals Recurrent Mutations and a Loss-of-Function {POLDIP2} Mutation in a Rare Undifferentiated Tongue Sarcoma",
	journal		= "F1000 Research",
	volume		= "7",
	pages		= "499",
	year		= "2018"}